Tuesday, March 11, 2014

Certificate for courier esmtpd

To enable SSL/TLS support for the ESMTP, you need to have a server certificate. Usually, the installation process of the package in a Linux distribution will create a default, self-signed certificate for you. However, if you want to create a proper certificate for your site, following is some simple steps to do so.

First, you need to generate a key for your server if you don't already have one:
openssl genrsa -out server.key 2048
With that key, you can then generate a certificate request:
openssl req -new -key server.key -out server.csr
If you did not customize your openssl.cnf configuration file, the above command will prompt you for the details of identify for the server in the certificate. Answer all questions as you please except for the common name "CN", which should be the host name to connect to your server.

Now, you need to get a Certificate Authority to sign your request. For example, if you have a demoCA setup for your openssl installation, you can do:
openssl ca -config openssl.cnf -policy policy_anything -out server.crt -infiles server.csr
This results in the certificate file server.crt. You then can combine the server key and certificate files to create the certificate file for the courier mail server.
cat server.key server.crt > esmtpd.pem
This used to be sufficient. However, the newer version (0.73) of courier requires a "DH parameters" block in the certificate file. This can be generated and appended with:
openssl dhparam 1024 >> esmtpd.pem
Now, you can point the "TLS_CERTFILE" in all the configuration files to the certificate esmtpd.pem and restart your server.

Tuesday, January 7, 2014

Example: data preprocessing with BASH

Case situation


I have run some batch jobs on a cluster to process data files for different systems (msc, ms, sh, rd) and parameters (i and w). The files are in different subdirectories:
[cjj@gust pattern]$ ls d-*/*.spd
d-msc/i275w042526.spd  d-ms/i285w025017.spd  d-rd/i295w042812.spd
d-msc/i280w040241.spd  d-ms/i290w023034.spd  d-sh/i275w051138.spd
d-msc/i285w036791.spd  d-ms/i295w020787.spd  d-sh/i280w047315.spd
d-msc/i290w031925.spd  d-rd/i270w065151.spd  d-sh/i285w043415.spd
d-msc/i295w026791.spd  d-rd/i275w060475.spd  d-sh/i290w039589.spd
d-ms/i270w034433.spd   d-rd/i280w055777.spd  d-sh/i295w035791.spd
d-ms/i275w030644.spd   d-rd/i285w051257.spd
d-ms/i280w027133.spd   d-rd/i290w046948.spd
[cjj@gust pattern]$
While, the output files are in the current directory:
[cjj@gust pattern]$ ls *.o*
i270w034433.spd.o172489  i275w060475.spd.o172496  i285w036791.spd.o172486
i270w065151.spd.o172495  i280w027133.spd.o172491  i290w023034.spd.o172493
i275w030644.spd.o172490  i280w040241.spd.o172485  i290w031925.spd.o172487
i275w042526.spd.o172484  i285w025017.spd.o172492  i295w026791.spd.o172488
[cjj@gust pattern]$
The format of the output log files are as follows:
[cjj@gust pattern]$ cat i270w034433.spd.o172489
MinTemplateNumber =  3
JT =  5
JN =  1
spikeResolution =  2
Number of initial spike patterns have been found : 562
ans = Creating surrogate data
ans = Creating time jittering surrogate data
ans = Creating neuron jittering surrogate data
Number of spike patterns have been valid by checking with sorrogate : 542
Number of spike patterns have been ruled out because of having less complex : 205
Number of valid spike patterns have been found : 337
[cjj@gust pattern]$

Problem task

Gather the stats in the log files as those marked in red.

Solution 1

This is done with a one-liner:
[cjj@gust pattern]$ for i in d-*/*.spd;do n=${i%/*};n=${n#d-};s=${i#*/};if [ -f ${s}.o* ];then w=${s%.spd};w=${w#*w}; echo ${n} ${s:1:2}.${s:3:1} $((1${w:0:2}-100)).${w:2} `grep ':' ${s}.o* | awk '{print $NF}'`;fi;done > matching_stat.txt
which can be broken down to:
for i in d-*/*.spd;do
  n=${i%/*}
  n=${n#d-}
  s=${i#*/}
  if [ -f ${s}.o* ];then
    w=${s%.spd}
    w=${w#*w}
    echo ${n} ${s:1:2}.${s:3:1} $((1${w:0:2}-100)).${w:2} `grep ':' ${s}.o* | awk '{print $NF}'`
  fi
done > matching_stat.txt
The data file generated is:
[cjj@gust pattern]$ cat matching_stat.txt 
msc 27.5 4.2526 81 75 22 53
msc 28.0 4.0241 237 217 103 114
msc 28.5 3.6791 393 371 156 215
msc 29.0 3.1925 335 322 132 190
msc 29.5 2.6791 445 437 144 293
ms 27.0 3.4433 562 542 205 337
ms 27.5 3.0644 1037 1006 331 675
ms 28.0 2.7133 1141 1093 341 752
ms 28.5 2.5017 1325 1274 462 812
ms 29.0 2.3034 1652 1609 747 862
rd 27.0 6.5151 1031 953 313 640
rd 27.5 6.0475 1042 963 345 618
[cjj@gust pattern]$

Thursday, July 12, 2012

Mental shelter

When one is not capable of standing the elements, one seeks shelter. This is a natural instinct that has facilitated our survival ever since we were weaklings. But, for one to arrive at an oasis, one must first grow capable of leaving the shelter and stand the elements. Such instinct extends to the mental aspect of our capability. There are small things that cater to ones mental comfort: Be it a game, be it a show, be it a sport, be it a habit, be it an article, or be it an addiction. They are all small compare to our goals that set on by our will. However, mental weakness leads to incapability of leaving such shelters.

Wednesday, June 6, 2012

Remote system upgrade (with grub and bmc-watchdog)

IPMI is a very very powerful tool for system administrators, especially those telecommuting ones. It's serial over LAN (SOL) support eliminates the need to personally sit in front of a server to do any pre-network operations, including reconfiguring the BIOS settings. However, it does require (A) an additional IP address to access the IPMI network interface from the Internet; or, when no additional IP can be allocated, (B) the access to a second server on the same LAN (not necessarily with administrator privilege). When either (A) or (B) is available, you can theoretically do anything remotely including fresh installation of an operation system (starting, for example, with a network boot and/or a remote drive).

Unfortunately, one of my recent situation allowed neither (A) nor (B). So, the first installation had no option but to be done by on-site personnel. But, once a networked system was up and running with a working grub boot manager, I could remotely install a new system on an unused (or a large enough swap) partition and test it out with the "boot once" support of grub. On a Debian based system with grub-2, this involves
  • changing the value of "GRUB_DEFAULT" in /etc/default/grub to "saved",
  • running "update-grub",
  • editing /boot/grub/grub.cfg to make an entry for the new system (if it was not discovered correctly by grub-probe),
  • running "grub-reboot" for the entry, and
  • rebooting the machine.
However, in most cases, you are bound to make some mistakes in the new system and fail to recover network contact to the server until an on-site person can hit the reset button of the machine for you.

Lucky for me, the BMC of the IPMI on the server did have a working watchdog timer. Therefore, I could setup the timer with enough time and start it before rebooting the machine. That way, if the new system worked, I could login to the server through the Internet and stopped the timer. But, if the new system got stuck, the watchdog would do a hard reset on the machine after the time ran out and returned to the original working system... no more waiting for on-site personnel. The actual command I used to setup the timer is bmc-watchdog from freeipmi:
  • bmc-watchdog -s -u 4 -p 0 -a 1 -F -P -L -S -O -i 900
One can consult the man page for the meaning of these options. Simply, this sets up 15 minutes on the timer for a hard reset, which can be checked with
  • bmc-watchdog -g
started with
  • bmc-watchdog -r
and stopped with
  • bmc-watchdog -y
(While, theoretically, one can achieve the same result with ipmitool, it did not work for me on the specific system.)

Thursday, September 15, 2011

Portable library for C++ GUI programming

It has been for a few occasions that I find my self wanting to port my GUI programs (most of which were written with gtkmm) to other platforms for the enjoyment of my friends. However, while most GUI toolkits claim to be portable to all platforms (Linux, Windows, and Mac), they generally require installation of multiple shared libraries by the users.

This is a major show stopper for most of my friends and is sufficient to kill any interest in them on the first mention. Therefore, the only viable mean is for me to make and send them statically-linked, monolithic executables that they can happily click on to start the shows. (They generally don't mind waiting a few minutes to download a bloated binary, as long as it remains a single step.)

My recent survey of the GUI library landscape brought my attention to GLUT. While it still requires installation on Windows, I can easily find static versions of FreeGLUT library for MingW that can be used to cross-compile, on Linux, statically-linked executables that can run independently on Windows. Furthermore, the GLUT framework, which, according to this, "is installed with every install of Mac OS X".

However, GLUT library only provides facilities for managing windows and handling user inputs. It is by no means a GUI toolkit and you will have to draw all user-interactive elements by yourself (in OpenGL). I do find a GUI library, GLUI, that is built on and should be as portable as GLUT. However, after porting a couple programs to GLUI, I failed to find it enjoyable for me to break up the C++-elegant logic of gtkmm and redo my work in a less polished API.

What follows is the birth of gltk, it is an implementation of the gtkmm API on GLUT. I actually started with adding the libsigc++'s signal-slot API to GLUI since the original callback mechanism only supported single static callback function and I needed more flexibility to port my programs. But, the hack soon proliferated into the entire source tree, and I decided it would be much more enjoyable for me to start something entirely from scratch.

After a somewhat persisting part-time effort that lasted more than a month, I have just made the first release of the library. It's usable for a simple application that only needs some buttons, checkboxes, sliders, single line text labels or entries to control calculations. For myself, this represent over 80% of the applications that I would have considered porting. I am feeling pretty happy about it and I hope some others will also find it useful.

Project Homepage: http://gltk.ccdw.org/

Tuesday, April 26, 2011

Permutation

The following spaghetti prints all permutations of a string ("abcd"). I wrote it as an example to show the benefit of structured programming in my class.
#include <iostream>
using namespace std;
int main()
{
        char c[] = "abcd\n";
        int size = sizeof(c) - 2;
        int n[size + 1];
        n[size] = 1;
        int idx = size;
        char t;
new_round:
        for (int i = 0; i < idx; i ++) n[i] = i + 1;
        cout << c;
start_shift:
        idx = 0;
        t = c[0];
shift_next:
        if (n[idx]) goto shift_done;
        idx ++;
        c[0] = c[idx];
        c[idx] = t;
        t = c[0];
        goto shift_next;
shift_done:
        n[idx] --;
        if (idx == size) return 0;
        if (n[idx] == 0) goto start_shift;
        goto new_round;
}
The structured version is as follows:
#include <iostream>
using namespace std;
int main()
{
        char c[] = "abcd\n";
        int size = sizeof(c) - 2;
        int n[size + 1];
        n[size] = 1;
        int idx = size;
        char t;
        do {
                if (n[idx]) {
                        for (int i = 0; i < idx; i ++) n[i] = i + 1;
                        cout << c;
                }
                idx = 0;
                t = c[0];
                while (n[idx] == 0) {
                        idx ++;
                        c[0] = c[idx];
                        c[idx] = t;
                        t = c[0];
                }
                n[idx] --;
        } while (idx < size);
        return 0;
}
The idea is to rotate a string by n times, where n is the length of the string. While, before each rotation, rotate the n-1 substring at the front n-1 times. And while, before each rotation, rotate the n-2 substring at the front n-2 times. And so on... We can see that this is more elegantly done recursively:
#include <iostream>
using namespace std;
char c[] = "abcd\n";
int size = sizeof(c) - 2;
void rotate(int l)
{
        char ch = c[l - 1];
        for (int i = l - 1; i; i --) c[i] = c[i - 1];
        c[0] = ch;
}
void perm(int l)
{
        if (l == 1) cout << c;
        else for (int i = 0; i < l; i ++) {
                perm(l - 1);
                rotate(l);
        }
}
int main()
{
        perm(size);
        return 0;
}
The above thinking counts on the string to have all distinct chars. When this isn't the case, a different approach is to consider the lexical order of the permutations. From a given permutation, we simply need to figure out the next in the lexical order until the order is "maximized". It turns out that this is in the C++ STL. My reimplementation is as follows:
#include <iostream>
using namespace std;
void swap(char & a, char & b)
{
        char c = a;
        a = b;
        b = c;
}
// increase the order of string
bool incr(char * str, size_t len)
{
        size_t i = 1;
        while (i < len && str[i - 1] >= str[i]) i ++;
        if (i == len) return false; // no kink
        // found a kink
        size_t j = i - 1;
        while (j > 0 && str[j - 1] < str[i]) j --; // size kink
        swap(str[i], str[j]); // shave kink
        // reverse rest
        for (i --, j = 0; j < i; i --, j ++) swap(str[i], str[j]);
        return true;
}
int main()
{
        char c[] = "aabbc\n";
        int size = sizeof(c) - 2;
        do cout << c; while (incr(c, size));
}

Thursday, March 17, 2011

Building driver for AverMedia A827 on Linux kernel 2.6.38

Vendor: AVerMedia
Product: AVerTV Hybrid Volar HX
Model: A827

This is a Analog+DVB-T USB TV receiver with official support for Linux up until 2009-11-26. The latest driver can be downloaded from the product page above.

The "Normal" automatic process of installing the driver fails for 2.6.38 kernel. Using the "Expert" process to extract the driver source code to a selected location allows one to compile the driver manually and track down the problems. First, the function calls for mutex initialization are gone and should be replaced with those of semaphore initialization. Second, the Teletext support is also gone and should be eliminated from the driver source code. These fixes are summarized in this patch.

However, compiling the driver with "make" results in the WARNINGs that the symbols "param_array_get" and "param_array_set" are undefined. This is due a prebuilt object file, "aver/osdep_dvb.o_shipped", that was built with an older version of kernel. Building this file requires some internal header files from kernel source tree that are not normally available in, e.g., linux-headers or kernel-headers packages. Provided that the kernel source tree for building the running kernel is installed/available in the system, the shipped object file can be removed. After this, the "make" command can complete without incidence. Installing the drivers ("averusbh826d.ko"  "h826d.ko") to the module directory, e.g., "/lib/modules/2.6.38/kernel/drivers/media/dvb/dvb-usb" and updating the module dependency with "depmod -a", the adapter seems to work normally afterwards.

Saturday, February 26, 2011

Straightforward

We make a choice. We stick to it. We can modify it. We can change it. But, we should never forget about it.

Monday, January 17, 2011

Addiction is the lost of ability to move on

Life is a tour of the world. You come without any preconception and build up a mind of yourself. You travel through time and space, through different stages of growth and experience. And when the time comes for you to leave, you leave with nothing but your mind. Just like for any tour, moving on is just as important as moving in. If you can not, the tour will still end wherever you are.

Sunday, October 24, 2010

Discipline

Mental discipline is much harder to adhere than physical discipline. However, it's the essential drive to a higher altitude in the cruise of life.

Monday, October 11, 2010

Setup isatap router on debian

The ifupdown package on Debian does not support isatap as a mode for v4tunnel. Therefore, one can not simply create a single entry in /etc/network/interfaces to make it work. Anyhow, following are the steps I took to set it up.
  1. Install iproute and radvd
  2. Add "net.ipv6.conf.all.forwarding=1" to /etc/sysctl.conf
  3. Add /etc/radvd.conf containing:
    interface is0
    {
        AdvSendAdvert on;
        UnicastOnly on;
        AdvHomeAgentFlag off;
        prefix 2002:aaaa:bbbb:1::/64
        {
            AdvOnLink on;
            AdvAutonomous on;
            AdvRouterAddr off;
        };
    };
    (replace "2002:aaaa:bbbb:1" with the prefix of your ipv6 subnet)
  4. Since I have my default address connected to a 6to4 tunnel on my eth0 already, I need to add an additional ip4 address to eth0. In /etc/network/interfaces I add the following post-up, and pre-down scripts to eth0:
    post-up ip tunnel add is0 mode isatap local 192.168.1.12 ttl 64
    post-up ip link set is0 up
    post-up ip addr add 2002:aaaa:bbbb:1::5efe:192.168.1.12/64 dev is0
    post-up ip addr add 192.168.1.12/32 dev eth0
    pre-down ip addr del 192.168.1.12/32 dev eth0
    pre-down ip link set is0 down
    pre-down ip tunnel del is0
    (again replace "2002:aaaa:bbbb:1")
  5. Restart the computer or do the following:
    $ sysctl -p
    $ ifdown eth0
    $ ifup eth0
    $ invoke-rc.d radvd start
On the client side, I just installed isatapd, added
ISATAP_ROUTERS="192.168.1.12"
to /etc/default/isatapd, and restarted with "invoke-rc.d isatapd restart". Then, everything works!

Monday, July 19, 2010

Trap

Rudimentary are things that can get us stuck. If we can not have them scaled with ease, how are we going to navigate more intricate endeavor. Methodical is the approach...

Wednesday, June 2, 2010

Non-interactive ssh password auth

There are situations where only password authentication is allowed on a remote SSH server. And, it may be desirable to have non-interactive password entry even under interactive terminal sessions, e.g., running git, rsync, etc. through ssh. However, OpenSSH makes this difficult by requiring interactive keyboard entry whenever there is an associated tty to the process. While it is possible to bypass this with an expect script, the easiest solution is sshpass.

Friday, May 28, 2010

Tax for holding intellectual properties

There are a few parallelisms between intellectual properties and real estate properties: They last indefinitely. They exclude public access. They cost law enforcement.

However, real estate properties are localized and the effect of any single property on general public is limited. (There could be exceptions, for example, the property of the only water source within a large area of land.) However, intellectual properties are generally universal since new knowledge is build on old. The effect of their restriction can grow and propagate to all aspects of public lives. (Imagine patent on wheels, clocks, or electricity; Copyrights on all classical texts or musics; Or, trademarks on commonly used words.)

So, under a necessary condition that such an intellectual property is to be granted to a private holder, proper tax should be assessed to recover the cost to the public. This can include loss of free access, blockage of innovation, and cost of property right enforcement. It is easy to imagine the growth of such cost will generally speed up in time. Thus, the tax rate should increase with the time that such a right is held.

Alternatively, the creation of intellectual properties can be compensated and rewarded up front and their access should be made free to the public. The only difficulty is in determining the value of these properties. As naive this may sound, it has been practiced since the incipiency of science, where scientific knowledge gained is open to the public and scientists are rewarded by fame and status for the impact they made. Similar difficulty exists in judging the value of a research, but the current system based on consensus appears to be working.

Friday, May 7, 2010

Processing command-line arguments in C++

I just released arg as a standalone library under LGPL. It's a command-line parser for C++ programs. The aim is to keep the programming effort in adding command-line processing to C++ programs at a minimum. There are several considerations in this direction:
  1. simple and intuitive syntax
  2. requiring no redundancy
  3. localized codes
  4. extensibility
  5. completeness
The simple example as given on the arg homepage,
#include <arg.hh>
#include <iostream>
int main(int argc, char ** argv)
{
        arg::Parser p;
        int n;
        p.add_opt('n').stow(n);
        p.parse(argc, argv);
        std::cout << n << '\n';
        return 0;
}
should be very close to the minimum as far as 1. goes.

Programming is for a programmer to describe what he wants the computer to do. Per point 2., he should not be asked to provide the same information multiple times. (Well, maybe except in situations where multiple confirmations are required: "Launch the missile. Please have the missile launched. Yes, I really want you to launch the missile! Launch the *&^%$ missile!!!"; Computer: "Aborted on Error: missile != *&^%$ missile".)

When working on an item, e.g., adding a new command-line option, the programmer won't be asked to go to multiple places in the codes if 3. is observed. While common and frequent usages should be supported and simplified in the library, new and novel applications will ask for 4. Finally, some rare, special, and/or tricky applications will demand 5. in the arsenal.

Thursday, May 6, 2010

Push forward

As an organic matter, one requires constant exertion to maintain tension. The process ends when tension is out.

Sunday, October 4, 2009

OpenSync with Nokia 2730 Classic

My Nokia 2730 classic is found to work with the following configuration file for the SyncML plugin for OpenSync:
<?xml version="1.0"?>
<config>
<bluetooth_address>XX:XX:XX:XX:XX:XX</bluetooth_address>
<bluetooth_channel>11</bluetooth_channel>
<interface>0</interface>
<identifier>PC Suite</identifier>
<version>1</version>
<wbxml>1</wbxml>
<username></username>
<password></password>
<type>2</type>
<usestringtable>0</usestringtable>
<onlyreplace>0</onlyreplace>
<onlyLocaltime>0</onlyLocaltime>
<recvLimit>0</recvLimit>
<maxObjSize>0</maxObjSize>
<contact_db>Contacts</contact_db>
<calendar_db>Calendar</calendar_db>
<note_db>Notes</note_db>
</config>
For more details see this guide and this HOWTO.

Thursday, February 26, 2009

synchronize work spaces on different machines

While working on a set of files on different machines, it's a common problem to keep things in sync. A real solution is to use a revision control system (with git being my current favorite). However, a quick fix is to use rsync. Following script tries to figure out which copy of the work space is newer and invokes rsync accordingly.
#!/bin/bash
if (( $# != 3 )); then
        echo "Usage: `basename $0` <local file> <remote host> <remote file>"
        exit 1;
fi
LOCAL_FILE="$1"
REMOTE_HOST="$2"
REMOTE_FILE="$3"

# make sure directories end with '/'
if [ -d "${LOCAL_FILE}" ]; then
        LOCAL_FILE=${LOCAL_FILE%/}/
        REMOTE_FILE=${REMOTE_FILE%/}/
        echo "sync directory: '`basename ${LOCAL_FILE}`' with ${REMOTE_HOST}"
else
        echo "sync file: '`basename ${LOCAL_FILE}`' with ${REMOTE_HOST}"
fi

# find out the last modification time in the entire directory
TM_LOCAL=`if [ -e "${LOCAL_FILE}" ]; then find $LOCAL_FILE -printf "%Ts %P\n"|sort|tail -n1; else echo 0; fi`
TM_REMOTE=`ssh ${REMOTE_HOST} "if [ -e \"${REMOTE_FILE}\" ]; then find $REMOTE_FILE -printf \"%Ts %P\n\"|sort|tail -n1; else echo 0; fi" < /dev/null`

echo Local Newest: $TM_LOCAL
echo Remote Newest: $TM_REMOTE
if [[ $TM_LOCAL < $TM_REMOTE ]]; then
        echo -n "remote => local"
        rsync -auz -e ssh --delete ${REMOTE_HOST}:"\"${REMOTE_FILE}\"" "${LOCAL_FILE}"
        echo ",  Done!"
elif [[ $TM_LOCAL > $TM_REMOTE ]]; then
        echo -n "local => remote"
        rsync -auz -e ssh --delete "${LOCAL_FILE}" ${REMOTE_HOST}:"\"${REMOTE_FILE}\""
        echo ",  Done!"
else
        echo "Nothing to do!"
fi

Wednesday, December 24, 2008

fox2html: foxmarks.json to HTML converter

This script converts "foxmarks.json" saved by the Firefox plugin, Foxmarks, on a self hosted server to a styled HTML file with interactive folders. An example output is here.

Thursday, September 25, 2008

Duplication elimination

In engineering a computation project, one desires a single point of information entry. It's elegant to come up with coding structures that will facilitate this requirement, that is, a single place in the codes pertinent to the to-be-computed problems. However, while the programming language is an interface between human and machine. It's not generally friendly to the users. The ultimate way of choice is to have human readable/editable files and make programs to generate corresponding codes when needed.